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MCP Server Audit - TODO and Future Improvements

Lists over 100 planned features, improvements, and research items for an MCP server security audit tool, organised by priority and area.

May 2, 2026
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What this file does

Lists over 100 planned features, improvements, and research items for an MCP server security audit tool, organised by priority and area.

When to use it

  • Prioritising backlog items for an MCP security tool
  • Planning a security audit framework for MCP servers
  • Identifying gaps in an existing MCP security assessment workflow
  • Structuring community contributions around a security tool

MCP Server Audit - TODO and Future Improvements

Immediate Priorities

Proof of Concept Demonstration

Priority: Critical

  • Create complete end-to-end walkthrough showing full audit process on real MCP server
  • Develop "Try It Now" 5-minute demo with copy-paste commands
  • Document sample MCP server audit finding multiple security issues with AIVSS scoring
  • Create vulnerability-db submission process documentation and examples
  • Build step-by-step guide demonstrating prompt usage and expected outputs
  • Show before/after security improvements from audit findings
  • Create sample vulnerability reports with both CVSS and AARS scoring examples

System Validation and Examples

Priority: High

  • Conduct end-to-end testing of security assessment workflow on real MCP servers
  • Create usage examples showing command patterns and expected outcomes
  • Test prompts with actual users to validate educational effectiveness
  • Document common user pain points and workflow friction
  • Create video or step-by-step walkthrough demonstrations

Additional Security Checks Development

Priority: High

  • Input validation security check (CWE-20: Improper Input Validation)
  • Authentication security check (CWE-287: Improper Authentication)
  • SQL injection security check (CWE-89: SQL Injection)
  • Path traversal security check (CWE-22: Path Traversal)
  • Code injection security check (CWE-94: Code Injection)
  • Cross-site scripting check (CWE-79: XSS) for web-based servers
  • Unsafe deserialization check (CWE-502: Deserialization)
  • AI-specific prompt injection security check
  • MCP protocol security check (transport, message validation)
  • Dependency vulnerability security check (supply chain)

Usage Examples and Documentation

Priority: High

  • Add usage examples to main README.md
  • Create examples for each prompt type (security assessment, targeted evaluation, discovery)
  • Document expected command patterns and file paths
  • Create troubleshooting guide for common issues
  • Add screenshots or terminal output examples

Quality Control System for Security Checks

Priority: High

  • Develop meta-prompts for AI check creation guidance
  • Create check validation framework to prevent low-quality checks
  • Establish check review process (peer review, testing against known servers)
  • Define check retirement criteria for outdated or ineffective checks
  • Implement check versioning and changelog system

Check Testing Framework

Priority: High

  • Create test cases for each check using known good/bad MCP servers
  • Develop automated testing pipeline for check effectiveness
  • Build validation datasets of MCP servers with known security characteristics
  • Establish metrics for check accuracy (false positive/negative rates)
  • Create check calibration process using community feedback

System Architecture Improvements

Implement Audit Exceptions Framework

Priority: High

  • Create mcpserver-audit/exceptions/ directory for structured exception definitions (YAML files).
  • Design the schema for exception files, including check_id, justification, scope (paths), and status.
  • Create a new prompts/exception-handling.md prompt to guide the AI on how to process and apply these exceptions.
  • Update the main audit workflow to consult the exceptions framework before reporting a finding.
  • Add a "Suppressed Findings" section to the final audit report format.
  • Create the first exception rule for "Hardcoded Placeholder Keys in Test Files" as a proof-of-concept.

Formalize Workflow Architecture

Priority: Medium

  • Investigate promoting the WORKFLOW.md concept into a top-level /workflows directory.
  • Define a schema for workflow files that orchestrate personas, frameworks, and skills.

Progressive Disclosure Implementation

Priority: Medium

  • Implement skill-level assessment mechanism
  • Create user experience pathways (novice/intermediate/advanced)
  • Develop adaptive check selection based on user skill level
  • Build learning progress tracking system
  • Create skill-appropriate check complexity levels

Community Intelligence System

Priority: Medium

  • Develop server reputation tracking system
  • Create community feedback aggregation mechanism
  • Build security incident tracking database
  • Implement server adoption and usage pattern analysis
  • Create ecosystem health monitoring dashboard

Demo and Integration Infrastructure

Priority: High

  • Create sample "vulnerable MCP server" for demonstration purposes
  • Build vulnerability-db integration workflow and submission templates
  • Develop quick-start documentation with real examples showing multiple findings per audit
  • Create pre-filled prompt templates users can copy-paste to try immediately
  • Build expected results documentation so users know if they're doing it right
  • Develop "common audit scenarios" with typical multi-issue findings
  • Create integration examples showing audit → vulnerability-db → community benefit workflow

Security Examples Library Development

Priority: Medium

  • Collect real-world MCP server security examples (good and bad patterns)
  • Create anonymized security case studies from actual assessments
  • Build searchable security examples database by vulnerability type
  • Develop security example maintenance and update process
  • Create security example contribution guidelines for community

Advanced Security Analysis Features

Deep Security Assessment Capabilities

Priority: Medium-High

  • Data Flow Analysis: Analyze MCP servers to construct data flow diagrams showing how sensitive information moves through the system
  • Automated Threat Modeling: Generate threat models for MCP servers based on their capabilities and data handling
  • Authentication Analysis: Deep dive into authentication mechanisms, token scoping, and access control patterns
  • API Security Review: Analyze external APIs used by servers for proper scoping, rate limiting, and security controls
  • Permission Boundary Analysis: Map out what permissions servers request vs. what they actually need
  • Network Security Assessment: Analyze network communication patterns, encryption, and potential data leakage
  • Input/Output Validation: Comprehensive analysis of data sanitization and validation practices
  • State Management Security: Review how servers handle session state, caching, and persistent data
  • Error Handling Analysis: Assess information disclosure through error messages and logging
  • Resource Exhaustion Testing: Identify potential DoS vectors and resource management issues

AI-Powered Security Discovery

Priority: Medium

  • Behavioral Pattern Analysis: Use AI to identify suspicious or unusual server behaviors
  • Code Similarity Analysis: Detect code reuse patterns that might indicate copied vulnerabilities
  • Security Anti-Pattern Detection: Train models to recognize insecure coding patterns specific to MCP servers
  • Contextual Risk Assessment: AI analysis of security risks based on server's intended use case
  • Emerging Threat Detection: Pattern recognition for novel attack vectors not covered by existing CVEs

Advanced Automated Analysis

Priority: Medium

  • Develop CI/CD integration for security checks
  • Create GitHub Action for automated MCP server security scanning
  • Build dependency vulnerability scanning integration
  • Implement code pattern analysis automation
  • Create security scorecard generation system
  • Runtime Security Analysis: Dynamic analysis of servers during execution
  • Container Security Assessment: Docker/containerization security analysis
  • Supply Chain Deep Analysis: Advanced dependency tree analysis and risk assessment

Security Integration Enhancements

Priority: Low

  • Deep integration with audit-db for historical security data
  • Enhanced vulnerability-db cross-referencing
  • Security-focused server-db data synchronization
  • Third-party security tool integrations (SAST, DAST, SCA)
  • Cloud security platform integrations

Security Assessment User Experience Improvements

Priority: Medium

  • Create interactive security assessment wizard
  • Develop security assessment report templating system
  • Build security assessment comparison and trending features
  • Create security assessment sharing and collaboration features
  • Implement security assessment scheduling and reminders

Research and Development

Security Research Areas

Priority: Medium

  • MCP-specific attack vector research
  • Supply chain security analysis for MCP ecosystem
  • Container and deployment security best practices research
  • Authentication and authorization pattern analysis
  • Privacy and data protection requirements research

Methodology Improvements

Priority: Low

  • Comparative analysis of different assessment methodologies
  • Statistical analysis of assessment effectiveness
  • Machine learning approaches for pattern detection
  • Behavioral analysis of secure vs. insecure MCP servers
  • Cost-benefit analysis of different security measures

Documentation and Training

Security Educational Content Development

Priority: Medium

  • Create comprehensive MCP security training curriculum
  • Develop video tutorials for security assessment scenarios
  • Build interactive security assessment simulations
  • Create MCP security awareness training materials
  • Develop MCP security assessor certification program

Community Building

Priority: Low

  • Establish MCP security working group
  • Create regular security assessment workshops
  • Build mentorship program for security assessment skills
  • Develop conference and presentation materials
  • Create community contribution recognition system

Infrastructure and Operations

System Scalability

Priority: Low

  • Design distributed assessment capability
  • Create assessment result caching and optimization
  • Build high-availability deployment architecture
  • Implement performance monitoring and alerting
  • Create backup and disaster recovery procedures

Compliance and Governance

Priority: Low

  • Develop compliance framework alignment (SOC 2, ISO 27001, etc.)
  • Create audit trail and logging requirements
  • Implement data retention and privacy policies
  • Build governance and oversight procedures
  • Create legal and regulatory compliance validation

Note: This TODO is a living document that should be updated regularly as priorities shift and new requirements emerge. Items should be moved from TODO to active development as capacity allows.

Last updated: 2025-08-07

What's inside

7 priority sections, 40+ checklist items, 5 architecture subsections, 3 advanced analysis subsections, 2 research subsections, 2 documentation subsections, 2 infrastructure subsections

Change this for your project

  • Replace mcpserver-audit/exceptions/ with your own project's exceptions directory path
  • Replace prompts/exception-handling.md with your own prompt file path
  • Replace WORKFLOW.md with your own workflow documentation filename

Where it goes

Keep alongside your test suite. Used to define and score model evaluations.

Worth borrowing

  • Organises improvements by priority (Critical, High, Medium, Low) and area (Immediate, Architecture, Advanced, Research, Documentation, Infrastructure)
  • Includes a proof-of-concept exception framework with schema fields (check_id, justification, scope, status)
  • Proposes a progressive disclosure system with skill-level assessment and adaptive check selection

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