ClaudeR

<div align="center">
  <img src="assets/ClaudeR_logo.png" alt="ClaudeR Logo" width="150"/>
  <h1>ClaudeR - The Modern Researcher's Toolkit</h1>
  <p>
    <b>Connect RStudio to Claude Code, Codex, Gemini CLI, or any MCP-based LLM agent for interactive coding, multi-agent orchestration, automated manuscript auditing, and data annotation.</b>
  </p>
  <p>
    <a href="https://opensource.org/licenses/MIT"><img src="https://img.shields.io/badge/License-MIT-blue.svg" alt="License: MIT"></a>
    <a href="https://github.com/IMNMV/ClaudeR/pulls"><img src="https://img.shields.io/badge/PRs-welcome-brightgreen.svg" alt="PRs Welcome"></a>
    <a href="https://github.com/IMNMV/ClaudeR/stargazers"><img src="https://img.shields.io/github/stars/IMNMV/ClaudeR?style=social" alt="GitHub stars"></a>
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    <a href="https://github.com/IMNMV/ClaudeR/commits/main"><img src="https://img.shields.io/github/last-commit/IMNMV/ClaudeR/main" alt="GitHub last commit"></a>
    <a href="https://pypi.org/project/clauder-mcp/"><img src="https://img.shields.io/pypi/v/clauder-mcp" alt="PyPI version"></a>
    <img src="https://img.shields.io/badge/R-%3E%3D4.0-blue?logo=r" alt="R version">
    <a href="https://glama.ai/mcp/servers/IMNMV/ClaudeR"><img src="https://glama.ai/mcp/servers/IMNMV/ClaudeR/badges/score.svg" alt="ClaudeR MCP server"></a>
  </p>
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**ClaudeR** is an R package that forges a direct link between RStudio and MCP configured LLM agents like Claude Code or Codex. This allows interactive coding sessions where the agent can execute code in your active RStudio environment so it can see the executed code and any generated plots in real-time. If you need help editing a script, a quick analysis done, or an LLM to audit your statistical claims against any manuscript before submission: ClaudeR has got your back.

This package, additionally, allows multiple agents to work on one script, or it can make multiple RStudio windows siloed so multiple agents can operate independently on d