Journal Article
Large Language Models

Large language models encode clinical knowledge

Karan Singhal(Google (United States)), Shekoofeh Azizi(Google (United States)), Tao Tu(Google (United States)), S. Sara Mahdavi(Google (United States)), Jason Lee(Google (United States)), Hyung Won Chung(Google (United States)), Nathan Scales(Google (United States)), Ajay Kumar Tanwani(Google (United States)), Heather Cole-Lewis(Google (United States)), Stephen Pfohl(Google (United States)), Perry W. Payne(Google (United States)), Martin Seneviratne(Google (United States)), Paul Gamble(Google (United States)), Christopher Kelly(Google (United States)), Abubakr Babiker(Google (United States)), Nathanael Schärli(Google (United States)), Aakanksha Chowdhery(Google (United States)), P. Mansfield(Google (United States)), Dina Demner‐Fushman(United States National Library of Medicine), Blaise Agüera y Arcas(Google (United States)), Dale R. Webster(Google (United States)), Greg S. Corrado(Google (United States)), Yossi Matias(Google (United States)), Katherine Chou(Google (United States)), Juraj Gottweis(Google (United States)), Nenad Tomašev(Google DeepMind (United Kingdom)), Yun Liu(Google (United States)), Alvin Rajkomar(Google (United States)), Joëlle Barral(Google (United States)), Christopher Semturs(Google (United States)), Alan Karthikesalingam(Google (United States)), Vivek Natarajan(Google (United States))
July 12, 2023Nature4,721 citations

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Influential Citations

Nature

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2023

Year

Abstract

Abstract Large language models (LLMs) have demonstrated impressive capabilities, but the bar for clinical applications is high. Attempts to assess the clinical knowledge of models typically rely on automated evaluations based on limited benchmarks. Here, to address these limitations, we present MultiMedQA, a benchmark combining six existing medical question answering datasets spanning professional medicine, research and consumer queries and a new dataset of medical questions searched online, HealthSearchQA. We propose a human evaluation framework for model answers along multiple axes including factuality, comprehension, reasoning, possible harm and bias. In addition, we evaluate Pathways Language Model 1 (PaLM, a 540-billion parameter LLM) and its instruction-tuned variant, Flan-PaLM 2 on MultiMedQA. Using a combination of prompting strategies, Flan-PaLM achieves state-of-the-art accuracy on every MultiMedQA multiple-choice dataset (MedQA 3 , MedMCQA 4 , PubMedQA 5 and Measuring Massive Multitask Language Understanding (MMLU) clinical topics 6 ), including 67.6% accuracy on MedQA (US Medical Licensing Exam-style questions), surpassing the prior state of the art by more than 17%. However, human evaluation reveals key gaps. To resolve this, we introduce instruction prompt tuning, a parameter-efficient approach for aligning LLMs to new domains using a few exemplars. The resulting model, Med-PaLM, performs encouragingly, but remains inferior to clinicians. We show that comprehension, knowledge recall and reasoning improve with model scale and instruction prompt tuning, suggesting the potential utility of LLMs in medicine. Our human evaluations reveal limitations of today’s models, reinforcing the importance of both evaluation frameworks and method development in creating safe, helpful LLMs for clinical applications.

Analysis

Why This Paper Matters

This paper is a landmark in the application of large language models to medicine. It directly addresses the critical gap between impressive automated benchmark scores and the stringent requirements of real-world clinical practice. By introducing MultiMedQA and a comprehensive human evaluation framework, the authors set a new standard for assessing LLMs in healthcare. The finding that even state-of-the-art models like Flan-PaLM, which achieve top scores on medical exam questions, still fall short of clinicians in nuanced human evaluation underscores the importance of going beyond automated metrics. This work is essential reading for anyone developing or deploying AI in clinical settings, as it provides both a methodology for rigorous evaluation and a clear demonstration of current limitations.

Technical Contributions

  • MultiMedQA Benchmark: A unified benchmark combining six existing datasets (MedQA, MedMCQA, PubMedQA, MMLU clinical topics, etc.) plus HealthSearchQA, covering professional medicine, research, and consumer queries.
  • Human Evaluation Framework: A multi-axis evaluation (factuality, comprehension, reasoning, possible harm, bias) that goes beyond simple accuracy to capture clinical relevance.
  • Instruction Prompt Tuning: A parameter-efficient method that uses a few exemplars to align LLMs to new domains, requiring far fewer resources than full fine-tuning.
  • State-of-the-Art Results: Flan-PaLM achieves 67.6% on MedQA, surpassing prior best by >17%, and sets new SOTA on all MultiMedQA multiple-choice datasets.
  • Scale and Tuning Insights: Demonstrates that both model scale and instruction prompt tuning improve comprehension, knowledge recall, and reasoning.

Results

Flan-PaLM achieves state-of-the-art accuracy on every MultiMedQA multiple-choice dataset: 67.6% on MedQA (USMLE-style), surpassing prior best by >17%; top scores on MedMCQA, PubMedQA, and MMLU clinical topics. However, human evaluation reveals that Med-PaLM, despite instruction prompt tuning, remains inferior to clinicians. For example, clinician answers are rated as more factual, comprehensible, and less harmful. The gap is especially pronounced in reasoning and handling of potential harm.

Significance

This paper has broad implications for the AI field, particularly in high-stakes domains like medicine. It provides a replicable framework for evaluating LLMs beyond simple benchmarks, emphasizing the need for human-centered assessment. The introduction of instruction prompt tuning offers a practical, resource-efficient method for domain adaptation. The results caution against over-reliance on automated metrics and highlight the importance of safety, bias, and reasoning in clinical AI. This work will likely influence future research directions, encouraging more holistic evaluation and development of models that can truly assist clinicians.